Eukaryotic genome size databases

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Eukaryotic genome size databases

Three independent databases of eukaryotic genome size information have been launched or re-released in updated form since 2005: the Plant DNA C-values Database (www.kew.org/genomesize/homepage.html), the Animal Genome Size Database (www.genomesize.com) and the Fungal Genome Size Database (www.zbi.ee/fungal-genomesize/). In total, these databases provide freely accessible genome size data for >1...

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Many sequence data repositories can give a quick and easily accessible overview on genomes and their annotations. Less widespread is the possibility to compare related genomes with each other in a common database environment. We have previously described the GenColors database system (http://gencolors.fli-leibniz.de) and its applications to a number of bacterial genomes such as Borrelia, Legion...

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Recent updates and developments to plant genome size databases

Two plant genome size databases have been recently updated and/or extended: the Plant DNA C-values database (http://data.kew.org/cvalues), and GSAD, the Genome Size in Asteraceae database (http://www.asteraceaegenomesize.com). While the first provides information on nuclear DNA contents across land plants and some algal groups, the second is focused on one of the largest and most economically i...

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Eukaryotic Genome Annotation Pipeline

The NCBI Eukaryotic Genome Annotation Pipeline is an automated pipeline producing annotation of coding and non-coding genes, transcripts, and proteins on finished and unfinished public genome assemblies. It provides content for various NCBI resources including Nucleotide, Protein, BLAST, Gene, and the Map Viewer genome browser. The pipeline uses a modular framework for the execution of all ann...

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Genome Databases

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ژورنال

عنوان ژورنال: Nucleic Acids Research

سال: 2007

ISSN: 0305-1048,1362-4962

DOI: 10.1093/nar/gkl828